PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 560aa    MW: 63043.7 Da    PI: 5.4927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3672.7e-21124225199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kvlt sd++++  l++ ++ a ++       ++k+ + +l+ +d++g +W++ + +r++++r++ltkGW++Fv +++L +gD+v+F   + ++
  XP_016464700.1 124 FCKVLTASDTNSNWGLTVRREDAIKCfppldiTKQKPIQ-ELIAKDLNGSEWQFCHVFRGQPRRHLLTKGWSKFVASKRLVAGDSVIFL--RGEN 215
                     99****************************985555564.9************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_016464700.1 216 GELCVGVRRQ 225
                     99*****996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-35118238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-26119227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-21123224No hitNo description
SMARTSM010192.4E-17124226IPR003340B3 DNA binding domain
PfamPF023629.0E-19124225IPR003340B3 DNA binding domain
PROSITE profilePS5086311.744124226IPR003340B3 DNA binding domain
PfamPF052785.2E-7402541IPR007942Phospholipase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MDGEIGSSHH QQENHVLVEG DYMYKELWKA CADPIMDLPK LGERVYYFPM NHMELLKESA  60
DQIIPLFDLP TDILCRVINI QLMVEPDTDE VYAHITLLPE ENQSDQTTPD AWSPQPLNSQ  120
FQSFCKVLTA SDTNSNWGLT VRREDAIKCF PPLDITKQKP IQELIAKDLN GSEWQFCHVF  180
RGQPRRHLLT KGWSKFVASK RLVAGDSVIF LRGENGELCV GVRRQAHRRH NIGSSPVSSQ  240
TVQGVLAVVS HAFATKRLFS VYYQPRKSRF ILSLSKYLEP NREKPSNQDL AQIASNGLST  300
NQASVDVLDC DVFGDIFLAA HPLFLENTPE SNGNCVGVAS TVQNFEGWPE PQRESFTTYP  360
QQPIPEPSAT ISTLQPTDTL QVMCTYSTPR QLPTEGSGFG SEQVSWAGYQ VAQQYVPILS  420
RVIMRYPSTI SGFKAITGAL QSVYLEMLAT LVDLLEKSRI GSMDNRNQFQ VIKQYLADLK  480
FIGIDISWIE TRLAQIDEVL KMEKLIQHQH TLARKIDETQ FTLGQLNQEL GSVRKELEEL  540
TPKVGPSPPS KDCSILEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-10152841287Auxin response factor 1
4ldw_A1e-10152841287Auxin response factor 1
4ldw_B1e-10152841287Auxin response factor 1
4ldx_A1e-10152841287Auxin response factor 1
4ldx_B1e-10152841287Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783661.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016464700.10.0PREDICTED: auxin response factor 1-like isoform X1
SwissprotQ8L7G02e-98ARFA_ARATH; Auxin response factor 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14681810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.41e-100auxin response factor 1